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Blog · Payroll Management · Healthcare

Healthcare Practices: Payroll Mistakes to Avoid (2026)

The costliest payroll mistakes in healthcare practices are misclassifying physicians and nurses, leaving shift differentials out of the overtime regular rate, and missing the healthcare practice tax rule cited here, IRS Employer Shared Responsibility Provisions. Each one compounds every pay cycle until an audit or a wage claim finds it. BEG: $45 per employee per month inside the payroll software you already use, live in 3 to 5 days.

By Anthony Moretti, VP of SalesPublished: June 28, 2026
A modern medical clinic with doctors and nurses caring for patients

Mistake 1: classification

Registered nurses licensed by the state examining board generally meet the learned professional duties test and may be treated as exempt only if paid on a salary basis of at least $684 per week; hourly-paid RNs must receive overtime. Licensed practical nurses generally do not qualify as exempt regardless of experience and are entitled to overtime pay.

Mistake 2: hours and the regular rate

Shift differentials and non-discretionary bonuses such as attendance, retention and supplementary shift bonuses must be added into the regular rate before the overtime premium is computed. Paying time and one half of the base hourly rate alone is a violation when differentials are paid.

Hospitals and residential care establishments may compute overtime over a fixed 14 consecutive day work period instead of the 40 hour workweek, paying time and one half for hours over 8 in a day and over 80 in the period. The employer must have a prior agreement or understanding with the affected employees before the work is performed, and cannot use both systems for the same employee.

Mistake 3: the healthcare practice tax item

An employer that averaged at least 50 full-time employees, counting full-time equivalents, in the prior calendar year is an applicable large employer and must offer affordable minimum essential coverage to full-time employees and their dependents or face an employer shared responsibility payment. A full-time employee is one with at least 30 hours of service a week or 130 hours a month; the base payments are $2,000 and $3,000 per employee per year, indexed, and were $2,970 and $4,460 for 2024.

What catches them

A pay code review at setup, an exemption file per employee, a regular-rate flag on every pay component, and a deposit calendar that does not depend on one person remembering. Failure-to-deposit penalties run 2 to 15 percent; back overtime runs at time and one half plus an equal amount in liquidated damages.

The rules behind this page, with sources

General information, not legal advice. Every rule below was read on the agency page linked next to it.

Read the full guide to how to correct a payroll error, and the rest of the healthcare practice payroll library.

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Frequently Asked Questions

What is the most common classification mistake in healthcare practices?

Registered nurses licensed by the state examining board generally meet the learned professional duties test and may be treated as exempt only if paid on a salary basis of at least $684 per week; hourly-paid RNs must receive overtime. Licensed practical nurses generally do not qualify as exempt regardless of experience and are entitled to overtime pay.

What wage and hour mistakes does DOL see in healthcare practices?

Shift differentials and non-discretionary bonuses such as attendance, retention and supplementary shift bonuses must be added into the regular rate before the overtime premium is computed. Paying time and one half of the base hourly rate alone is a violation when differentials are paid.

Which healthcare practice tax rule is most often missed?

An employer that averaged at least 50 full-time employees, counting full-time equivalents, in the prior calendar year is an applicable large employer and must offer affordable minimum essential coverage to full-time employees and their dependents or face an employer shared responsibility payment. A full-time employee is one with at least 30 hours of service a week or 130 hours a month; the base payments are $2,000 and $3,000 per employee per year, indexed, and were $2,970 and $4,460 for 2024.

What does managed payroll cost for a healthcare practice?

$45 per employee per month, all-inclusive, inside the payroll software you already use, with no monthly minimum. Shift differentials, on-call pay and credentialing-based pay tiers are configured at setup, not billed as add-ons.

Related Resources

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Anthony Moretti, VP of Sales

Anthony leads payroll solutions at Business Executive Group, a national managed payroll firm serving businesses across industries including Healthcare Practices. BEG manages payroll at $45 PEPM, all-inclusive, with deep expertise in compliance, multi-state filing, and industry-specific payroll requirements. Get instant pricing at beghr.com.

Authoritative source: U.S. Bureau of Labor Statistics: Occupational Employment and Wage Statistics